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Title: | BMP antagonist CHRDL2 enhances the cancer stem cell phenotype and increases chemotherapy resistance in Colorectal Cancer |
Authors: | Clarkson, E Lewis, A |
Keywords: | colorectal cancer;chordin-like 2;bone-morphogenic protein;WNT signalling pathway;cancer stem cell |
Issue Date: | 20-Feb-2024 |
Publisher: | Cold Spring Harbor Laboratory |
Citation: | Clarkson, E. and Lewis, A. (2024) 'BMP antagonist CHRDL2 enhances the cancer stem cell phenotype and increases chemotherapy resistance in Colorectal Cancer', bioRxiv [preprint], 2024.01.23.576664, pp. 1 - [38]. doi: 10.1101/2024.01.23.576664. |
Abstract: | Chordin-like-2 (CHRDL2) is a secreted BMP antagonist, with overexpression and genomic variants associated with colorectal cancer (CRC) risk. BMP signalling in the normal intestinal epithelium operates in opposition to the WNT signalling pathway, which maintains stem-cells and self-renewal. Elevated WNT signalling leads to expansion of the stem cell compartment and hyperproliferation, defining characteristics of CRC. Here, we explored the impact of CHRDL2 overexpression on CRC cells and normal intestinal organoids to investigate whether CHRDL2’s inhibition of BMP signalling intensified WNT signalling, and enhanced the cancer stem-cell phenotype. CHRDL2 increased cell survival during chemotherapy and irradiation with associated activation of DNA damage response pathways. Organoids treated with secreted CHRDL2 exhibited elevated levels of stem cell markers and reduced differentiation. RNA-seq analysis revealed that CHRDL2 increased the expression of stem cell markers and well-established cancer-associated pathways. We suggest that CHRDL2 overexpression can augment the stem-cell potential of CRC and normal intestinal cells. |
Description: | Data visualisation and R:
Data was cleaned and significant data was extracted using R software. Graphs we generated using R studio 4.1.0 using libraries ggplot2 and heatmap2.
Gene-set-enrichment analysis was performed using the GSEA software 4.2.3. The Chip annotation platform used was Human_Ensembl_Transcript_ID_MSigDB.v7.5.1.chip.
Gene sets used:
* c6.all.v7.5.1.symbols.gmt
* h.all.v7.5.1.symbols.gmt
* GOBP_REGULATION_OF_BMP_SIGNALING_PATHWAY
* enplot_REACTOME_PI3K_AKT_SIGNALING_IN_CANCER_13
* enplot_GOMF_BMP_RECEPTOR_BINDING_58
* WP_NRF2_PATHWAY.v2023.1.Hs. The article currently archived on this institutional repository is a BioRxiv preprint available online at https://doi.org/10.1101/2024.01.23.576664 . It has not been certified by peer review (see: https://www.biorxiv.org/about/FAQ#unrefereed). It has been submitted to Gut pending peer review and acceptance for publication. This is a preprint. It has not been certified by a journal but peer reviews are available [submitted to Gut (BMJ)] |
URI: | https://bura.brunel.ac.uk/handle/2438/28272 |
DOI: | https://doi.org/10.1101/2024.01.23.576664 |
ISSN: | 0017-5749 |
Other Identifiers: | ORCID iD: Eloise Clarkson https://orcid.org/0009-0004-4740-0498 ORCID iD: Annabelle Lewis https://orcid.org/0000-0003-1876-1927 2024.01.23.576664 |
Appears in Collections: | Dept of Life Sciences Research Papers |
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Preprint-v2.pdf | bioRxiv preprint doi: https://doi.org/10.1101/2024.01.23.576664; this version posted February 20, 2024. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license (https://creativecommons.org/licenses/by/4.0/). | 1.96 MB | Adobe PDF | View/Open |
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