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http://bura.brunel.ac.uk/handle/2438/32176
Title: | Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data |
Authors: | Tachmazidou, I Hatzikotoulas, K Southam, L Esparza-Gordillo, J Haberland, V Zheng, J Johnson, T Koprulu, M Zengini, E Steinberg, J Wilkinson, JM Bhatnagar, S Hoffman, JD Buchan, N Süveges, D Yerges-Armstrong, L Davey Smith, G Gaunt, TR Scott, RA McCarthy, LC Zeggini, E arcOGEN Consortium |
Keywords: | genetic association study;genetics;genome-wide association studies |
Issue Date: | 21-Jan-2019 |
Publisher: | Springer Nature |
Citation: | Tachmazidou, I. et al on behalf of the arcOGEN Consortium (2019) 'Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data', Nature Genetics, 51 (2), pp. 230 - 236. doi: 10.1038/s41588-018-0327-1. |
Abstract: | Osteoarthritis is the most common musculoskeletal disease and the leading cause of disability globally. Here, we performed a genome-wide association study for osteoarthritis (77,052 cases and 378,169 controls), analyzing four phenotypes: knee osteoarthritis, hip osteoarthritis, knee and/or hip osteoarthritis, and any osteoarthritis. We discovered 64 signals, 52 of them novel, more than doubling the number of established disease loci. Six signals fine-mapped to a single variant. We identified putative effector genes by integrating expression quantitative trait loci (eQTL) colocalization, fine-mapping, and human rare-disease, animal-model, and osteoarthritis tissue expression data. We found enrichment for genes underlying monogenic forms of bone development diseases, and for the collagen formation and extracellular matrix organization biological pathways. Ten of the likely effector genes, including TGFB1 (transforming growth factor beta 1), FGF18 (fibroblast growth factor 18), CTSK (cathepsin K), and IL11 (interleukin 11), have therapeutics approved or in clinical trials, with mechanisms of action supportive of evaluation for efficacy in osteoarthritis. |
Description: | Data availability:
All RNA sequencing data have been deposited in the European Genome-Phenome Archive (cohort 1, EGAD00001001331; cohort 2, EGAD00001003355; and cohort 3, EGAD00001003354). Genotype data of the arcOGEN cases and UKHLS controls have been deposited at the European Genome-Phenome Archive under accession numbers EGAS00001001017 and EGAS00001001232, respectively. Supplementary information is available online at: https://www.nature.com/articles/s41588-018-0327-1#Sec25 . A list of members and affiliations appears in the Supplementary Note. |
URI: | https://bura.brunel.ac.uk/handle/2438/32176 |
DOI: | https://doi.org/10.1038/s41588-018-0327-1 |
ISSN: | 1061-4036 |
Other Identifiers: | ORCiD: Konstantinos Hatzikotoulas https://orcid.org/0000-0002-4699-3672 ORCiD: Lorraine Southam https://orcid.org/0000-0002-7546-9650 ORCiD: Valeriia Haberland https://orcid.org/0000-0002-3874-0683 ORCiD: Jeremy M. Wilkinson https://orcid.org/0000-0001-5577-3674 ORCiD: Sahir Bhatnagar https://orcid.org/0000-0001-8956-2509 ORCiD: George Davey Smith https://orcid.org/0000-0002-1407-8314 ORCiD: Tom R. Gaunt https://orcid.org/0000-0003-0924-3247 ORCiD: Eleftheria Zeggini https://orcid.org/0000-0003-4238-659X |
Appears in Collections: | Dept of Computer Science Research Papers |
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FullText.pdf | Copyright © The Author(s), under exclusive licence to Springer Nature America, Inc. 2019. This version of the article has been accepted for publication, after peer review (when applicable) and is subject to Springer Nature’s AM terms of use, but is not the Version of Record and does not reflect post-acceptance improvements, or any corrections. The Version of Record is available online at: https://doi.org/10.1038/s41588-018-0327-1 (see: https://www.springernature.com/gp/open-research/policies/journal-policies ). | 1.13 MB | Adobe PDF | View/Open |
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