Please use this identifier to cite or link to this item: http://bura.brunel.ac.uk/handle/2438/32176
Title: Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data
Authors: Tachmazidou, I
Hatzikotoulas, K
Southam, L
Esparza-Gordillo, J
Haberland, V
Zheng, J
Johnson, T
Koprulu, M
Zengini, E
Steinberg, J
Wilkinson, JM
Bhatnagar, S
Hoffman, JD
Buchan, N
Süveges, D
Yerges-Armstrong, L
Davey Smith, G
Gaunt, TR
Scott, RA
McCarthy, LC
Zeggini, E
arcOGEN Consortium
Keywords: genetic association study;genetics;genome-wide association studies
Issue Date: 21-Jan-2019
Publisher: Springer Nature
Citation: Tachmazidou, I. et al on behalf of the arcOGEN Consortium (2019) 'Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data', Nature Genetics, 51 (2), pp. 230 - 236. doi: 10.1038/s41588-018-0327-1.
Abstract: Osteoarthritis is the most common musculoskeletal disease and the leading cause of disability globally. Here, we performed a genome-wide association study for osteoarthritis (77,052 cases and 378,169 controls), analyzing four phenotypes: knee osteoarthritis, hip osteoarthritis, knee and/or hip osteoarthritis, and any osteoarthritis. We discovered 64 signals, 52 of them novel, more than doubling the number of established disease loci. Six signals fine-mapped to a single variant. We identified putative effector genes by integrating expression quantitative trait loci (eQTL) colocalization, fine-mapping, and human rare-disease, animal-model, and osteoarthritis tissue expression data. We found enrichment for genes underlying monogenic forms of bone development diseases, and for the collagen formation and extracellular matrix organization biological pathways. Ten of the likely effector genes, including TGFB1 (transforming growth factor beta 1), FGF18 (fibroblast growth factor 18), CTSK (cathepsin K), and IL11 (interleukin 11), have therapeutics approved or in clinical trials, with mechanisms of action supportive of evaluation for efficacy in osteoarthritis.
Description: Data availability: All RNA sequencing data have been deposited in the European Genome-Phenome Archive (cohort 1, EGAD00001001331; cohort 2, EGAD00001003355; and cohort 3, EGAD00001003354). Genotype data of the arcOGEN cases and UKHLS controls have been deposited at the European Genome-Phenome Archive under accession numbers EGAS00001001017 and EGAS00001001232, respectively.
Supplementary information is available online at: https://www.nature.com/articles/s41588-018-0327-1#Sec25 . A list of members and affiliations appears in the Supplementary Note.
URI: https://bura.brunel.ac.uk/handle/2438/32176
DOI: https://doi.org/10.1038/s41588-018-0327-1
ISSN: 1061-4036
Other Identifiers: ORCiD: Konstantinos Hatzikotoulas https://orcid.org/0000-0002-4699-3672
ORCiD: Lorraine Southam https://orcid.org/0000-0002-7546-9650
ORCiD: Valeriia Haberland https://orcid.org/0000-0002-3874-0683
ORCiD: Jeremy M. Wilkinson https://orcid.org/0000-0001-5577-3674
ORCiD: Sahir Bhatnagar https://orcid.org/0000-0001-8956-2509
ORCiD: George Davey Smith https://orcid.org/0000-0002-1407-8314
ORCiD: Tom R. Gaunt https://orcid.org/0000-0003-0924-3247
ORCiD: Eleftheria Zeggini https://orcid.org/0000-0003-4238-659X
Appears in Collections:Dept of Computer Science Research Papers

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