Please use this identifier to cite or link to this item: http://bura.brunel.ac.uk/handle/2438/33104
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dc.contributor.authorRagusa, D-
dc.contributor.authorSuen, CW-
dc.contributor.authorTorregrosa Cortes, G-
dc.contributor.authorPastorino, F-
dc.contributor.authorJohns, A-
dc.contributor.authorCicirò, Y-
dc.contributor.authorDijkhuis, L-
dc.contributor.authorvan den Brink, S-
dc.contributor.authorCilli, M-
dc.contributor.authorByrne, C-
dc.contributor.authorIonescu, G-A-
dc.contributor.authorCerveira, J-
dc.contributor.authorKranc, KR-
dc.contributor.authorHernandez-Hernandez, V-
dc.contributor.authorPonzoni, M-
dc.contributor.authorBigas, A-
dc.contributor.authorGarcia-Ojalvo, J-
dc.contributor.authorMartínez Arias, A-
dc.contributor.authorPina, C-
dc.date.accessioned2026-04-03T12:38:35Z-
dc.date.available2025-09-11-
dc.date.available2026-04-03T12:38:35Z-
dc.date.issued2025-09-11-
dc.identifierORCiD: Denise Ragusa https://orcid.org/0000-0002-0303-8683-
dc.identifierORCiD: Gabriel Torregrosa Cortes https://orcid.org/0000-0003-4528-5663-
dc.identifierORCiD: Ylenia Cicirò https://orcid.org/0000-0003-1607-3266-
dc.identifierORCiD: Anna Bigas https://orcid.org/0000-0003-4801-6899-
dc.identifierORCiD: Alfonso Martínez Arias https://orcid.org/0000-0002-1781-564X-
dc.identifierORCiD: Cristina Pina https://orcid.org/0000-0002-2575-6301-
dc.identifier.citationRagusa, D. et al. (2025) 'Dissecting infant leukemia developmental origins with a hemogenic gastruloid model', eLife, 14, RP102324, pp. 1–34. doi: 10.7554/elife.102324.en-US
dc.identifier.urihttps://bura.brunel.ac.uk/handle/2438/33104-
dc.descriptionData availability: Raw data as well as processed count matrices and post-processed files from single cell RNA-seq for the time-resolved data is available at at Array Express with accession code E-MTAB-12148. Bulk RNA-seq of MNX1 overexpressing gastruloids is available at Array Express with accession code E-MTAB-12173. The post-processing was performed in Python on DockerHub: dsblab/single_cell_analysis:0.5. Scripts are available in https://github.com/dsb-lab/blood_gastruloids (copy archived at Torregrosa Cortes, 2025) and Zenodo (https://doi.org/10.5281/zenodo.7053423). The results published here are partly based upon data generated by the Therapeutically Applicable Research to Generate Effective Treatments (TARGET) (https://ocg.cancer.gov/programs/target) initiative, of the Acute Myeloid Leukemia (AML) cohort GDC TARGET-AML. The data used for this analysis are available at https://portal.gdc.cancer.gov/ and https://xenabrowser.net/ . The following data sets were generated: Ragusa DSuen WCortés GTPina C (2022) ArrayExpress ID E-MTAB-12148. Single cell analysis of gastruloid hemogenic development. https://www.ebi.ac.uk/biostudies/arrayexpress/studies/E-MTAB-12148 . Ragusa DSuen WCortés GTPina C (2022) ArrayExpress ID E-MTAB-12173. RNA sequencing of mouse embryonic stem cells (mES) and hemogenic gastruloids with MNX1 overexpression. https://www.ebi.ac.uk/biostudies/ArrayExpress/studies/E-MTAB-12173?query=E-MTAB-12173 .en-US
dc.description.abstractCurrent in vitro models of developmental blood formation lack spatio-temporal accuracy and weakly replicate successive waves of hematopoiesis. Herein, we describe a mouse embryonic stem cell (SC)-derived 3D hemogenic gastruloid (haemGx) that captures multi-wave blood formation, progenitor specification from hemogenic endothelium (HE), and generates hematopoietic progenitors capable of short-term engraftment of immunodeficient mice upon maturation in an in vivo niche. We took advantage of the haemGx model to interrogate the origins of infant acute myeloid leukemia (infAML). We focused on MNX1-driven leukemia, representing the commonest genetic abnormality unique to the infant group. Enforced MNX1 expression in haemGx promotes the expansion and in vitro transformation of yolk sac-like erythroid-myeloid progenitors at the HE-to-hematopoietic transition to faithfully recapitulate patient transcriptional signatures. By combining phenotypic, functional, and transcriptional profiling, including at the single-cell level, we establish the haemGx as a useful new model for the study of normal and leukemic embryonic hematopoiesis.en-US
dc.description.sponsorshipThis project was funded by a start-up grant and a BRIEF award from Brunel University London, a Little Princess Trust (LPT) Project Grant (CCLGA 2023 22 Pina) and a National Centre for the Replacement, Refinement and Reduction of Animals in Research (NC3Rs) project grant (NC/Z500677/1) to CP, by an Agencia Estatal de Investigación grant (PLEC2021-007518) to AB and AMA, and by an ERC Advanced Grant (MiniEmbryoBlueprint 834580) to AMA. LPT research is funded in partnership with CCLG through the CCLG Charity Research Network. DR received funding from the Royal Society of Biology (MRSB Travel Grant). GTC was funded by grant FPU18/05091 from the Spanish Ministry of Universities. AJ is funded by a Lady Tata Memorial Trust International Scholarship (2022). SvdB was funded by an EMBO Postdoctoral Fellowship (ALTF 195–2021) and is in receipt of a HFSP Postdoctoral Fellowship (LT0047/2022 L). Work in the CP lab was also funded by a KKLF Intermediate Fellowship (KL888), a Leuka John Goldman Fellowship for Future Science (2017–2019), and a Wellcome Trust/ISSF Bridge Funding award at the University of Cambridge (2019). JGO acknowledges financial support from the Spanish Ministry of Science and Innovation and FEDER (grant PGC2018-101251-B-I00), by the Maria de Maeztu Programme for Units of Excellence in R&D (grant CEX2018-000792-M), and by the Generalitat de Catalunya (ICREA Academia programme). MP acknowledges funding from the Italian Ministry of Health (Ricerca Finalizzata 5 per mille and Ricerca Corrente to MP).en-US
dc.format.extent1–34-
dc.format.mediumElectronic-
dc.languageen-USen-US
dc.language.isoenen-US
dc.publishereLife Sciences Publicationsen-US
dc.rightsCreative Commons Attribution 4.0 International-
dc.rights.urihttps://creativecommons.org/licenses/by/4.0/-
dc.titleDissecting infant leukemia developmental origins with a hemogenic gastruloid modelen-US
dc.typeArticleen-US
dc.identifier.doihttps://doi.org/10.7554/elife.102324-
dc.relation.isPartOfeLife-
pubs.publication-statusPublished online-
pubs.volume14-
dc.identifier.eissn2050-084X-
dc.rights.licensehttps://creativecommons.org/licenses/by/4.0/legalcode.en-
dc.rights.holderRagusa, Suen, Torregrosa Cortes et al.-
dc.contributor.orcidRagusa, Denise [0000-0002-0303-8683]-
dc.contributor.orcidTorregrosa Cortes, Gabriel [0000-0003-4528-5663]-
dc.contributor.orcidCicirò, Ylenia [0000-0003-1607-3266]-
dc.contributor.orcidBigas, Anna [0000-0003-4801-6899]-
dc.contributor.orcidMartínez Arias, Alfonso [0000-0002-1781-564X]-
dc.contributor.orcidPina, Cristina [0000-0002-2575-6301]-
dc.identifier.numberRP102324-
Appears in Collections:Department of Life Sciences Research Papers

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